2025
Youn Jae Kang, Antonio C. Costa, Siyu Serena Ding. Natural variation in Caenorhabditis elegans collective behavior reveals potential adaptation to novel environments bioRxiv
2024
Antonio C. Costa#, Tosif Ahamed, David Jordan, Greg J. Stephens. A Markovian dynamics for C.elegans behavior across scales PNAS Github repo: https://github.com/AntonioCCosta/markov_worm
Gautam Sridhar, Massimo Vergassola, João Marques, Michael Orger, Antonio C. Costa#, Claire Wyart#. Uncovering multiscale structure in the variability of larval zebrafish navigation PNAS Github repo: https://github.com/GautamSridhar/Markov_Fish
Antonio C. Costa#,Gautam Sridhar, Claire Wyart, Massimo Vergassola. Fluctuating landscapes and heavy tails in animal behavior PRX Life Github repo: https://github.com/AntonioCCosta/fluctuating_potential
W. Mathijs Rozemuller, Steffen Werner, Antonio C. Costa, Liam O’Shaughnessy, Greg J. Stephens, Thomas S. Shimizu. Statistics of C. elegans turning behavior reveals optimality under biasing constraints eLife
2023
Antonio C. Costa#, Tosif Ahamed, David Jordan, Greg J. Stephens. Maximally predictive states: From partial observations to long timescales Chaos Github repo: https://github.com/AntonioCCosta/maximally_predictive_states
2021
Tosif Ahamed, Antonio C. Costa, Greg J. Stephens. Capturing the Continuous Complexity of Behavior in C. elegans Nature Physics (see also News & Views article)
Laetitia Hebert, Tosif Ahamed, Antonio C. Costa, Liam O’Shaughnessy, Greg J. Stephens. WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans PLoS Comput Biol Python package docs: https://iteal.github.io/wormpose/
2019
Stephen J. Helms*, W. Mathijs Rozemuller*, Antonio C. Costa*, Leon Avery, Greg J. Stephens, Thomas S. Shimizu. Modelling the ballistic-to-diffusive transition in nematode motility reveals variation in exploratory behaviour across species J. R. Soc. Interface
Antonio C. Costa, Tosif Ahamed, Greg J. Stephens. Adaptive locally-linear models of complex dynamics PNAS Github repo: https://github.com/AntonioCCosta/local-linear-segmentation